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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8392324_8395998_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
8392324 - 8395998
Intron Length:
3675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCACTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGATCTGTAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
81.1
0.7
0.8
75.8
32.4
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
53.8
0.2
2.1
74.88
41.6

Associated Gene:

Gene:
MBTD1
Ensembl Gene ID:
ENSAPLG00000002996
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003098
8392133 - 8421921
29789