About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8405831_8406386_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8405831 - 8406386
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATAT
Flanking Amino Acid:
FWIAGIVKLAGYNALLRYEG
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.8
85.6
24.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.7
0.85
0.8
85.7
33.4
Minor 5ss
33.2
-1.9
2.9
41.8
44.8
Minor BPS
65.1
0.55
1.6
84.45
36.3

Associated Gene:

Gene:
MBTD1
Ensembl Gene ID:
ENSAPLG00000002996
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021539
8390731 - 8421921
31191
ENSAPLT00000003098
8392133 - 8421921
29789