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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8406522_8407006_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8406522 - 8407006
Intron Length:
485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TCATTTGCAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
GTCCCCTTCATT
Flanking Amino Acid:
TSGKPLVPPRTIQHKYTNWK
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
70.2
0.46
1
65.9
39.6
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
59.3
0.37
1.8
73.98
43.1

Associated Gene:

Gene:
MBTD1
Ensembl Gene ID:
ENSAPLG00000002996
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021539
8390731 - 8421921
31191
ENSAPLT00000003098
8392133 - 8421921
29789