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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8426484_8426896_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8426484 - 8426896
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
TCTTCTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
TCTTCTTCCACA
Flanking Amino Acid:
IRGDFCIQVGRNIIHGSDSV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
60.3
0.26
1
65.5
28
Major PPT
84.4
0.77
0.7
79.7
25.8
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
55.6
0.17
2
71.01
41.7

Associated Gene:

Gene:
NME2
Ensembl Gene ID:
ENSAPLG00000030083
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047393
8426366 - 8428497
2132