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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8427010_8427769_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8427010 - 8427769
Intron Length:
760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTGGC
5'SS Class:
major
3'SS Sequence:
TTTGTCCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTGTCCCTGAAG
Flanking Amino Acid:
YMNSGPIVAMVWEGLNVVKT
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
65
39.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
72.5
0.51
1
72.8
32.5
Minor 5ss
39.3
-1.2
3.1
49.2
42.4
Minor BPS
54
-0
1.9
64.71
43

Associated Gene:

Gene:
NME2
Ensembl Gene ID:
ENSAPLG00000030083
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047393
8426366 - 8428497
2132