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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8430882_8431213_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8430882 - 8431213
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTGTATTAATT
Flanking Amino Acid:
IRGDLCVQVGRNIIHGSDSV
Intron Amino Acid Position:
115

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
87.6
0.85
0.6
84.2
23.7
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
61.8
0.45
1.7
78.9
37.5

Associated Gene:

Gene:
NME1
Ensembl Gene ID:
ENSAPLG00000020737
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033970
8430764 - 8432853
2090