About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8431327_8432110_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8431327 - 8432110
Intron Length:
784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTACTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TTTTTTTTTACT
Flanking Amino Acid:
YMHSGPVVAMVWEGLNVVKT
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
76.8
0.6
1
83.6
30.6
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
74
0.84
1.5
91.27
31.8

Associated Gene:

Gene:
NME1
Ensembl Gene ID:
ENSAPLG00000020737
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033970
8430764 - 8432853
2090