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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8439090_8445827_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8439090 - 8445827
Intron Length:
6738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTGTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCTAATTTGACT
Flanking Amino Acid:
EKALRKQAEEKFIEFEDSQE
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
79.9
0.67
0.8
73.8
36.8
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
60.7
0.42
1.6
76.68
40

Associated Gene:

Gene:
SPAG9
Ensembl Gene ID:
ENSAPLG00000015555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025430
8438784 - 8498453
59670
ENSAPLT00000016312
8438784 - 8498453
59670
ENSAPLT00000040472
8438784 - 8498453
59670
ENSAPLT00000030775
8438784 - 8498453
59670