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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8445949_8457277_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8445949 - 8457277
Intron Length:
11329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTAATTTTAATT
Flanking Amino Acid:
ELKAKNYADQISRLEEREAE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
86
23.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85
0.79
0.7
77.9
36.6
Minor 5ss
36.8
-1.5
2.7
42.6
38.4
Minor BPS
70.3
0.72
1.2
80.87
34.9

Associated Gene:

Gene:
SPAG9
Ensembl Gene ID:
ENSAPLG00000015555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016312
8438784 - 8498453
59670
ENSAPLT00000040472
8438784 - 8498453
59670
ENSAPLT00000030775
8438784 - 8498453
59670
ENSAPLT00000025430
8438784 - 8498453
59670