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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8457349_8465607_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8457349 - 8465607
Intron Length:
8259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TCATTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCATTTTAAACA
Flanking Amino Acid:
YNALHSRHTEMIHNYMEHLE
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.9
38.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
72.9
0.51
1
70
39.2
Minor 5ss
34.5
-1.8
3.3
49
47.2
Minor BPS
58.9
0.28
1.6
66.93
40.2

Associated Gene:

Gene:
SPAG9
Ensembl Gene ID:
ENSAPLG00000015555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025430
8438784 - 8498453
59670
ENSAPLT00000016312
8438784 - 8498453
59670
ENSAPLT00000040472
8438784 - 8498453
59670
ENSAPLT00000030775
8438784 - 8498453
59670