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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8475084_8475768_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8475084 - 8475768
Intron Length:
685

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTTAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AATTCTTTAACA
Flanking Amino Acid:
DKDLSGYKGSSTPTKGIENK
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.1
0.57
1
70.3
39.2
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
82.5
1.02
1
83.13
30.5

Associated Gene:

Gene:
SPAG9
Ensembl Gene ID:
ENSAPLG00000015555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027468
8466084 - 8498453
32370
ENSAPLT00000025430
8438784 - 8498453
59670
ENSAPLT00000016312
8438784 - 8498453
59670
ENSAPLT00000040472
8438784 - 8498453
59670
ENSAPLT00000030775
8438784 - 8498453
59670