Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8480361_8480798_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

8480361 - 8480798

Intron Length:

438

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAT|GTAGGTGTA

5'SS Class:

major

3'SS Sequence:

TGTGTGTGTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAT

U12 Branch Point Sequence:

CTTTGTTCATTT

Flanking Amino Acid:

ARQKAKEDDDSDVPTAQRKR

Intron Amino Acid Position:

482

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

1.1

74.4

36.1

Major BPS

84.8

0.86

85.7

34.9

Major PPT

72.3

0.5

1.1

69.2

46.1

Minor 5ss

37.3

-1.4

3.6

52.6

44.9

Minor BPS

45.9

-0.2

2.1

67.22

44.6

Associated Gene:

Gene:

SPAG9

Ensembl Gene ID:

ENSAPLG00000015555

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025430

8438784 - 8498453

59670

ENSAPLT00000016312

8438784 - 8498453

59670

ENSAPLT00000040472

8438784 - 8498453

59670

ENSAPLT00000030775

8438784 - 8498453

59670

ENSAPLT00000027468

8466084 - 8498453

32370