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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8480930_8482119_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8480930 - 8482119
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGACTC
5'SS Class:
strong_major
3'SS Sequence:
TCGTCTCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TACTCAGTAAAT
Flanking Amino Acid:
QEAVRWTEMIRASRENPAMQ
Intron Amino Acid Position:
525

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
79
35.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.2
0.63
0.8
73.4
31.5
Minor 5ss
36.5
-1.5
3.2
50.8
45.8
Minor BPS
48.1
-0
2.3
71.75
44.5

Associated Gene:

Gene:
SPAG9
Ensembl Gene ID:
ENSAPLG00000015555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025430
8438784 - 8498453
59670
ENSAPLT00000016312
8438784 - 8498453
59670
ENSAPLT00000040472
8438784 - 8498453
59670
ENSAPLT00000030775
8438784 - 8498453
59670
ENSAPLT00000027468
8466084 - 8498453
32370