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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8484036_8484305_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8484036 - 8484305
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTGCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTATTTATTT
Flanking Amino Acid:
GWSLPQKYKQVANGGQGDNK
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
61.4
38.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.1
0.72
0.8
80.1
32
Minor 5ss
44.4
-0.6
2.8
60
44.5
Minor BPS
59.3
0.37
1.7
77.93
38.7

Associated Gene:

Gene:
SPAG9
Ensembl Gene ID:
ENSAPLG00000015555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030775
8438784 - 8498453
59670
ENSAPLT00000027468
8466084 - 8498453
32370
ENSAPLT00000025430
8438784 - 8498453
59670
ENSAPLT00000016312
8438784 - 8498453
59670
ENSAPLT00000040472
8438784 - 8498453
59670