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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8487087_8487890_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8487087 - 8487890
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACATAGT
5'SS Class:
major
3'SS Sequence:
CTGTGTTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTATTTTAACT
Flanking Amino Acid:
TTEASPVYQPSTDSELYKDV
Intron Amino Acid Position:
931

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
75.3
40.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.7
0.65
0.9
76.9
37.3
Minor 5ss
35.7
-1.6
3.1
51.7
44.8
Minor BPS
74.3
0.84
1.2
85.02
35.1

Associated Gene:

Gene:
SPAG9
Ensembl Gene ID:
ENSAPLG00000015555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030775
8438784 - 8498453
59670
ENSAPLT00000027468
8466084 - 8498453
32370
ENSAPLT00000025430
8438784 - 8498453
59670
ENSAPLT00000016312
8438784 - 8498453
59670
ENSAPLT00000040472
8438784 - 8498453
59670