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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8491587_8492609_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8491587 - 8492609
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGCTCATAATT
Flanking Amino Acid:
DIEPYVSKMLGTGKLGFSFV
Intron Amino Acid Position:
1129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.5
1.07
0.7
84.1
30.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89.4
0.89
0.7
88.9
28.2
Minor 5ss
39.6
-1.2
2.8
49.9
46.3
Minor BPS
61
0.43
1.6
77.95
38.5

Associated Gene:

Gene:
SPAG9
Ensembl Gene ID:
ENSAPLG00000015555
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030775
8438784 - 8498453
59670
ENSAPLT00000027468
8466084 - 8498453
32370
ENSAPLT00000016312
8438784 - 8498453
59670
ENSAPLT00000040472
8438784 - 8498453
59670