About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8588945_8591133_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8588945 - 8591133
Intron Length:
2189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTACCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTTTTCTTACCC
Flanking Amino Acid:
TCKRECEADLECETFEKCCP
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.2
28.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
80.6
0.69
0.8
74.1
30.7
Minor 5ss
29.1
-2.4
3.2
36.8
41.9
Minor BPS
70.4
0.62
1.6
78.59
37

Associated Gene:

Gene:
WFIKKN2
Ensembl Gene ID:
ENSAPLG00000015552
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016202
8587433 - 8591334
3902