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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8606316_8606874_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8606316 - 8606874
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TTCCTTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATAGAT
U12 Branch Point Sequence:
CAGAGCACAACC
Flanking Amino Acid:
DPNSQNEVDGWTCLHWACKR
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
53.6
0.09
1.3
52.7
43.2
Major PPT
80.4
0.68
0.7
73.1
31.8
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
39.8
-0.8
2.1
45.58
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015535
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016183
8606173 - 8609743
3571