About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8607024_8607706_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8607024 - 8607706
Intron Length:
683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTTC
5'SS Class:
major
3'SS Sequence:
ATTTCATTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
ATTTCATTAATA
Flanking Amino Acid:
SKPDIRKILGEEDNECQGAK
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
66.9
39.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.7
0.49
0.9
67.5
37.5
Minor 5ss
40.3
-1.1
3.5
59
45.8
Minor BPS
75.6
0.8
1.5
83.27
30.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015535
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016183
8606173 - 8609743
3571