About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8621607_8622164_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
8621607 - 8622164
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TCTAAATGTTAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTTCTAAAT
Flanking Amino Acid:
RSRSRERRRSRSRDRRRSRS
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
58.3
0.19
1.2
60.7
43.8
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
63.9
0.51
1.7
85.47
34.3

Associated Gene:

Gene:
LUC7L3
Ensembl Gene ID:
ENSAPLG00000015263
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015931
8619814 - 8634552
14739