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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8623085_8623992_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8623085 - 8623992
Intron Length:
908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TGTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCT
Flanking Amino Acid:
ERELLRSTTSTIESFAAQEK
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
100
1.24
0.5
100
0
Major PPT
89.2
0.88
0.7
84.5
30.4
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
61.1
0.43
1.8
83.46
37.9

Associated Gene:

Gene:
LUC7L3
Ensembl Gene ID:
ENSAPLG00000015263
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015931
8619814 - 8634552
14739