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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8624098_8624172_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8624098 - 8624172
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TATTGTCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ACTTGCTTAATA
Flanking Amino Acid:
TDKIDVLLQQIEELGSEGKV
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.9
1.06
0.6
93
14.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.6
0.71
0.8
78.2
36
Minor 5ss
40.7
-1
3
57.8
46.8
Minor BPS
66.7
0.52
1.8
73.28
39.2

Associated Gene:

Gene:
LUC7L3
Ensembl Gene ID:
ENSAPLG00000015263
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015931
8619814 - 8634552
14739