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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8624248_8624586_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8624248 - 8624586
Intron Length:
339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TACTGCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
ATATATATAAAT
Flanking Amino Acid:
ALSQNQQSSGAAGPTGKNEE
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
68.8
43.8
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
72
0.49
0.9
65.6
35.7
Minor 5ss
31.9
-2.1
2.9
33
41.8
Minor BPS
49.3
0.03
1.8
71.01
39

Associated Gene:

Gene:
LUC7L3
Ensembl Gene ID:
ENSAPLG00000015263
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015931
8619814 - 8634552
14739