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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8626022_8634453_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8626022 - 8634453
Intron Length:
8432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CCTCTTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAA
U12 Branch Point Sequence:
AAAAAAAAAACT
Flanking Amino Acid:
RSNVRWDHESVCKYYLFGFF
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.6
0.32
1.3
57.5
42.3
Major BPS
47.9
-0.1
0.9
51.7
28.4
Major PPT
86.2
0.81
0.7
83.9
24.2
Minor 5ss
28.5
-2.5
3.1
30
36.1
Minor BPS
37.8
-0.8
2
53.29
40.4

Associated Gene:

Gene:
LUC7L3
Ensembl Gene ID:
ENSAPLG00000015263
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015931
8619814 - 8634552
14739