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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8636965_8639483_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8636965 - 8639483
Intron Length:
2519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CTTCCATGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AGTATTTCAAAC
Flanking Amino Acid:
DPNSQNEVNGWTCLHWACKR
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.8
0.56
0.9
69.2
35.8
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
47.4
-0.2
1.6
55.7
35.9

Associated Gene:

Gene:
ANKRD40
Ensembl Gene ID:
ENSAPLG00000015126
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045803
8636843 - 8643466
6624
ENSAPLT00000015769
8636843 - 8644969
8127