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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8643380_8644942_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8643380 - 8644942
Intron Length:
1563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGCGAC
5'SS Class:
major
3'SS Sequence:
ACTCTTCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
ACCCTCTAAACT
Flanking Amino Acid:
DFQELELVLTKMTPSDWR*
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
60.8
38.7
Major BPS
73
0.57
1
73.6
28.6
Major PPT
78.3
0.64
0.8
72.2
31.8
Minor 5ss
38.8
-1.3
3.4
55.4
43.3
Minor BPS
53.7
0.2
1.7
66.82
44.1

Associated Gene:

Gene:
ANKRD40
Ensembl Gene ID:
ENSAPLG00000015126
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015769
8636843 - 8644969
8127