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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8665315_8666637_R

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8665315 - 8666637
Intron Length:
1323

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTAC
5'SS Class:
strong_major
3'SS Sequence:
ACCAATAATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CAATAAT
U12 Branch Point Sequence:
TTACCAATAATC
Flanking Amino Acid:
AIAIKTRAFQVEQMRYKDSR
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.1
30.7
Major BPS
67.7
0.44
1.1
67.9
34.4
Major PPT
54.6
0.1
1
44.5
40.6
Minor 5ss
37
-1.5
3.3
49.2
47.3
Minor BPS
51.3
0.02
1.9
67.54
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017936
8646908 - 8695286
48379
ENSAPLT00000014397
8646908 - 8694759
47852