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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8679089_8679954_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8679089 - 8679954
Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTCGTAGC
5'SS Class:
major
3'SS Sequence:
TTACTTTTCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCACAT
U12 Branch Point Sequence:
TGTTCCTGTACT
Flanking Amino Acid:
VTPLIVGITMLLATLLIQYE
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.2
61.1
43.5
Major BPS
77.7
0.69
1
83.3
27.7
Major PPT
84
0.76
0.8
79.6
32.2
Minor 5ss
31.5
-2.1
2.7
34.9
34.8
Minor BPS
67.5
0.63
1.8
86.31
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014397
8646908 - 8694759
47852