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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8680081_8680965_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8680081 - 8680965
Intron Length:
885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATGT
5'SS Class:
strong_major
3'SS Sequence:
TGACTACTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
TTCTGTTTGACT
Flanking Amino Acid:
VLSVLSRFKTLFGVLLWCVS
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
72.8
39.3
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
74.7
0.56
0.9
70.5
40
Minor 5ss
40.1
-1.1
3.2
57.3
46.8
Minor BPS
65
0.55
1.8
82.51
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014397
8646908 - 8694759
47852