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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8681143_8694729_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8681143 - 8694729
Intron Length:
13587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TCTCTGTTAATA
Flanking Amino Acid:
MEVFCGSRFWDSNLSIHTDN
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
95.2
1.02
0.5
89
28.1
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
54.5
0.14
2
67.76
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013703
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014397
8646908 - 8694759
47852