About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8724201_8725632_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8724201 - 8725632
Intron Length:
1432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGACAA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTTACCATATTA
Flanking Amino Acid:
RIMRVLRIARVLKLLKMAVG
Intron Amino Acid Position:
1645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
73
33.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
82.5
0.73
0.9
77.3
37
Minor 5ss
25.8
-2.8
2.9
29.5
43.2
Minor BPS
49.8
-0
1.9
66.17
40.1

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016558
8706214 - 8802324
96111
ENSAPLT00000016557
8718165 - 8799975
81811
ENSAPLT00000016521
8706214 - 8802324
96111