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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8726930_8728901_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8726930 - 8728901
Intron Length:
1972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGGC
5'SS Class:
major
3'SS Sequence:
GTCCACATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TGGCATCTAACT
Flanking Amino Acid:
MAMEHYQQPKVLDEALKICN
Intron Amino Acid Position:
1564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.7
0.35
1.3
56.6
42.5
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
65
0.34
0.9
54.6
39.8
Minor 5ss
34
-1.8
3.8
50.3
46.3
Minor BPS
48.7
-0
1.9
68.2
42.1

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016558
8706214 - 8802324
96111
ENSAPLT00000016557
8718165 - 8799975
81811
ENSAPLT00000016521
8706214 - 8802324
96111