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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8737193_8738610_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
8737193 - 8738610
Intron Length:
1418

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
TCGCCGGCTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAGCCAA
U12 Branch Point Sequence:
GGGAGGAGAAGA
Flanking Amino Acid:
HKYNFDNLGQKKRRSKEKQM
Intron Amino Acid Position:
1402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
44.6
-0.3
1.2
48.2
36.6
Major PPT
47.3
-0.1
1.7
49.7
39.3
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
27.3
-1.7
2.2
31.36
35.1

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016522
8737007 - 8802324
65318