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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8738737_8742048_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8738737 - 8742048
Intron Length:
3312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATGT
Flanking Amino Acid:
FIIFGILGVQLFKGKFFVCQ
Intron Amino Acid Position:
1360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.6
0.67
0.9
73.4
41.3
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
60.7
0.41
1.9
79.06
43.7

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016522
8737007 - 8802324
65318
ENSAPLT00000016521
8706214 - 8802324
96111
ENSAPLT00000016558
8706214 - 8802324
96111
ENSAPLT00000016557
8718165 - 8799975
81811