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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8752698_8753788_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8752698 - 8753788
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
TCTTCCTTGGCA
Flanking Amino Acid:
WSIYIFAPHSRFRLMCNKII
Intron Amino Acid Position:
1191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.4
43.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
79.4
0.66
0.9
76.6
32
Minor 5ss
34.4
-1.8
3.4
46.7
48.6
Minor BPS
50.3
0
3.5
78.22
38.8

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016557
8718165 - 8799975
81811
ENSAPLT00000016522
8737007 - 8802324
65318
ENSAPLT00000016521
8706214 - 8802324
96111
ENSAPLT00000016558
8706214 - 8802324
96111