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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8760266_8760404_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8760266 - 8760404
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGGACC
5'SS Class:
major
3'SS Sequence:
ATCCCTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTGTCCCCATCC
Flanking Amino Acid:
DPAAYELKSPPSARSSPHSP
Intron Amino Acid Position:
1009

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.6
39.8
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
72
0.5
0.8
65.8
29.4
Minor 5ss
35.7
-1.6
3.2
50.2
40
Minor BPS
48.6
-0.1
2.1
67.57
43.7

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016557
8718165 - 8799975
81811
ENSAPLT00000016522
8737007 - 8802324
65318
ENSAPLT00000016521
8706214 - 8802324
96111
ENSAPLT00000016558
8706214 - 8802324
96111