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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8768033_8768367_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8768033 - 8768367
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAACC
5'SS Class:
major
3'SS Sequence:
GTTTTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTGTCCTGATAC
Flanking Amino Acid:
LLWAIVTVFQILTQEDWNKV
Intron Amino Acid Position:
858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
66
38
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
86.8
0.83
0.7
81.5
30.6
Minor 5ss
33
-1.9
3.2
44.5
43
Minor BPS
54.5
0.12
1.9
68.78
42.3

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016557
8718165 - 8799975
81811
ENSAPLT00000016522
8737007 - 8802324
65318
ENSAPLT00000016521
8706214 - 8802324
96111
ENSAPLT00000016558
8706214 - 8802324
96111