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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8769779_8770308_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8769779 - 8770308
Intron Length:
530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATCCCCTACT
Flanking Amino Acid:
NIFDGIIVVISVWEILVRFM
Intron Amino Acid Position:
778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
74
36.6
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.2
0.59
0.7
73.5
24.8
Minor 5ss
45.8
-0.4
2.6
59.7
45.1
Minor BPS
47.6
-0.1
2.2
70.33
45.8

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016522
8737007 - 8802324
65318
ENSAPLT00000016521
8706214 - 8802324
96111
ENSAPLT00000016558
8706214 - 8802324
96111
ENSAPLT00000016557
8718165 - 8799975
81811