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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8785416_8787072_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8785416 - 8787072
Intron Length:
1657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
GGGGCTCTGATG
Flanking Amino Acid:
NFIYFILLIIVGSFFMINLC
Intron Amino Acid Position:
339

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.3
0.36
1.3
59.3
40.2
Major BPS
79
0.72
1
69
38.9
Major PPT
67.9
0.4
0.8
62
28.8
Minor 5ss
29.1
-2.4
3.1
35.1
35.5
Minor BPS
42.4
-0.7
1.7
39.91
38.3

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016557
8718165 - 8799975
81811
ENSAPLT00000016522
8737007 - 8802324
65318
ENSAPLT00000016521
8706214 - 8802324
96111
ENSAPLT00000016558
8706214 - 8802324
96111