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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8787166_8787681_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8787166 - 8787681
Intron Length:
516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CTGCCCCCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCCC
U12 Branch Point Sequence:
CTGCCCCCACCA
Flanking Amino Acid:
IGYAWIAIFQVITLEGWVDI
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
35.6
-0.9
4.2
77.4
37.4
Major PPT
64.2
0.32
0.9
55.7
35
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
42.6
-0.5
2.1
53.74
44.4

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016558
8706214 - 8802324
96111
ENSAPLT00000016557
8718165 - 8799975
81811
ENSAPLT00000016522
8737007 - 8802324
65318
ENSAPLT00000016521
8706214 - 8802324
96111