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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8787974_8789839_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8787974 - 8789839
Intron Length:
1866

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCCT
5'SS Class:
major
3'SS Sequence:
TGGCCCCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAAAC
U12 Branch Point Sequence:
CAAACCCCAGCC
Flanking Amino Acid:
NRCFLPENFSIPYAVDLERY
Intron Amino Acid Position:
210

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73.5
37
Major BPS
52.2
0.06
1.1
59
36
Major PPT
74.2
0.54
0.9
69.8
36.6
Minor 5ss
33.8
-1.8
3
47.3
41.1
Minor BPS
40.6
-0.7
2
46.89
41.3

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016521
8706214 - 8802324
96111
ENSAPLT00000016558
8706214 - 8802324
96111
ENSAPLT00000016522
8737007 - 8802324
65318