Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8789705_8789839_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8789705 - 8789839

Intron Length:

135

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTGAGTCCT

5'SS Class:

major

3'SS Sequence:

GGAGTCAGGTCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATCCCAC

U12 Branch Point Sequence:

TGCACGTAGATG

Flanking Amino Acid:

NRCFLPENFSINLPFTSHSR

Intron Amino Acid Position:

162

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

73.5

Major BPS

53.6

0.09

1.2

64.1

33.9

Major PPT

48.9

-0

1.2

43.9

46.4

Minor 5ss

33.8

-1.8

47.3

41.1

Minor BPS

39.9

-0.9

2.3

43.28

42.8

Associated Gene:

Gene:

CACNA1G

Ensembl Gene ID:

ENSAPLG00000015833

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016557

8718165 - 8799975

81811