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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8791878_8799608_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8791878 - 8799608
Intron Length:
7731

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
GTGTGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTGAC
U12 Branch Point Sequence:
AGACCCTTGACG
Flanking Amino Acid:
NRLDFFIVIAGMLEYSLDLQ
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.9
42.8
Major BPS
61.6
0.29
1.1
54.6
40.8
Major PPT
73.7
0.53
1
66
40.8
Minor 5ss
27.7
-2.6
2.7
23.9
36.9
Minor BPS
62.8
0.26
1.4
60.53
40.7

Associated Gene:

Gene:
CACNA1G
Ensembl Gene ID:
ENSAPLG00000015833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016558
8706214 - 8802324
96111
ENSAPLT00000016557
8718165 - 8799975
81811
ENSAPLT00000016522
8737007 - 8802324
65318
ENSAPLT00000016521
8706214 - 8802324
96111