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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8866984_8867214_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8866984 - 8867214
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGCT
5'SS Class:
strong_major
3'SS Sequence:
CATCTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TTCCTCTCATCT
Flanking Amino Acid:
HTSVDPWDVPDVKPKAEPAA
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
73.2
34.8
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
80.9
0.7
0.8
77.3
31
Minor 5ss
30.5
-2.2
3.8
47.1
48.5
Minor BPS
51.9
0.14
1.8
73.23
43.6

Associated Gene:

Gene:
EPN3
Ensembl Gene ID:
ENSAPLG00000025709
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037191
8866180 - 8870930
4751