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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8867894_8869042_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8867894 - 8869042
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCCT
5'SS Class:
major
3'SS Sequence:
CCTCTGTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCACCCCATTT
Flanking Amino Acid:
LAMSREEAEKKPLPPLSSTD
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67
44.2
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
71.7
0.49
1
67.9
37.6
Minor 5ss
32
-2.1
3.6
47.9
47.8
Minor BPS
44.5
-0.3
2.1
65.73
44.9

Associated Gene:

Gene:
EPN3
Ensembl Gene ID:
ENSAPLG00000025709
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037191
8866180 - 8870930
4751