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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8869162_8869455_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8869162 - 8869455
Intron Length:
294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTCAC
U12 Branch Point Sequence:
TGCTCCTTCACC
Flanking Amino Acid:
RTRGSPSSFNSSSSSPRFAS
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
65.1
0.38
1.1
68.9
36.5
Major PPT
87.9
0.85
0.7
81
31
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
68.6
0.57
1.8
75.07
41.7

Associated Gene:

Gene:
EPN3
Ensembl Gene ID:
ENSAPLG00000025709
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037191
8866180 - 8870930
4751