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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8876169_8876606_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
8876169 - 8876606
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCAAA
5'SS Class:
major
3'SS Sequence:
TGTCTCCTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATATTCTTGACT
Flanking Amino Acid:
IEVYGLLDSMDLLTAASLGH
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
72
34.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.9
0.67
0.8
77.3
31.4
Minor 5ss
33.4
-1.9
2.8
36.4
42
Minor BPS
77.2
0.94
1.1
85.84
33.6

Associated Gene:

Gene:
MYCBPAP
Ensembl Gene ID:
ENSAPLG00000003268
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003354
8876077 - 8888051
11975