Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8877294_8877489_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

8877294 - 8877489

Intron Length:

196

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TGTCACTGAATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TGTCACTGAATA

Flanking Amino Acid:

TTKTAGKEKEEFPNSRKSKV

Intron Amino Acid Position:

804

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

25.6

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

59.4

0.21

54.9

39.9

Minor 5ss

35.3

-1.7

3.2

50.4

Minor BPS

56.2

0.19

1.6

68.19

37.4

Associated Gene:

Gene:

MYCBPAP

Ensembl Gene ID:

ENSAPLG00000003268

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018157

8875131 - 8888051

12921

ENSAPLT00000003354

8876077 - 8888051

11975

ENSAPLT00000043173

8876324 - 8888051

11728