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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8877624_8878125_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8877624 - 8878125
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGTTAAT
U12 Branch Point Sequence:
TTTGGGTTAATT
Flanking Amino Acid:
TCVDVLPEETVEVKQPIKGG
Intron Amino Acid Position:
759

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
78.6
35.9
Major BPS
66.6
0.41
1.4
69.7
44.2
Major PPT
88
0.85
0.6
84.5
23.3
Minor 5ss
33.8
-1.8
3.4
49.7
46.6
Minor BPS
50.3
0.09
2.5
79.08
43.9

Associated Gene:

Gene:
MYCBPAP
Ensembl Gene ID:
ENSAPLG00000003268
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003354
8876077 - 8888051
11975
ENSAPLT00000043173
8876324 - 8888051
11728
ENSAPLT00000018157
8875131 - 8888051
12921