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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8878242_8878953_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8878242 - 8878953
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGTGTTAC
5'SS Class:
major
3'SS Sequence:
ATACTTTTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTCTGATAC
Flanking Amino Acid:
PTQSDLLYQTCLQLWRETID
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
0.9
68.9
31.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
79
0.65
0.9
77.1
36.2
Minor 5ss
41.3
-1
2.7
48.3
42.5
Minor BPS
49.8
-0
1.8
65.23
39.8

Associated Gene:

Gene:
MYCBPAP
Ensembl Gene ID:
ENSAPLG00000003268
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003354
8876077 - 8888051
11975
ENSAPLT00000043173
8876324 - 8888051
11728
ENSAPLT00000018157
8875131 - 8888051
12921